Polish Bioinformatics Society

PTBi Symposium: Krakow 2019 — Program

Thu, Sep 19th
11:00	Registration
12:30	Lunch
13:30	Opening
13:40	Keynote lecture: Metagenomic discovery of new viruses and antivirus defense systems: towards a general theory of virus-host coevolution Eugene Koonin, Evolutionary Genomics Research Group, NLM/NCBI, Bethesda, U.S.A.
	Session P1-1 [contributed presentations - chair W. Rudnicki]
14:20	Inferring genomic duplication events Jarosław Paszek
14:40	A linearization of a sequence graph Anna Lisiecka
15:00	Identification of unique microbial signatures in subway and urban biomes Dedan Githae Małopolska Centre of Biotechnology of Jagiellonian University, Kraków, Poland
15:20	Coffee break
15:40	Sponsor presentation Gut feeling: function-oriented design of microbial community Jan Majta Ardigen
	Session F1 [Flash talks - chair P, Łabaj]
16:20	Flash presentations 1-16
17:40	Posters & snacks List of posters in the conference book

Friday, Sep 20th
9:00	Keynote lecture: Sparse modeling and inference of networks Vilda PurutcuogluDepartmengt of Statistcs, Middle East technical University, Ankara,Turkey
	Session P2-1 [contributed presentations - chair M. Szachniuk]
9:40	Secondary structure-based classification of nucleic acid quadruplexes Joanna Miśkiewicz
10:00	Machine learning approach for general quality assessment of tertiary RNA structures Marcin Zabłocki
10:20	PartSeg - new tool for qualitative processing of high resolution microscopy data Grzegorz Bokota
10:40	Conference photo & coffee break
11:00	Keynote lecture: Charging the Code - Structural insights into tRNA Modification enzymes Sebastian Glatt, Małopolska Center of Biotechnology of Jagiellonian University, Kraków, Poland
	Session P2-2 [contributed presentations - chair B. Wilczyński]
11:40	Prediction and characterization of amyloidogenic fragments in proteins Jakub Wojciechowski
12:00	HaDeX: an R package and web-server for analysis of data from hydrogen-deuterium exchange mass spectrometry experiments Michał Burdukiewicz
12:20	CBRClustering: A new method for clustering proteins based on their low complexity regions Patryk Jarnot
12:40	Lunch
13:40	Sponsor presentation QIAGEN Bioinformatics: from reads to data interpretation Cristian Cosentino QIAGEN
	Session P2-3 [contributed presentations - chair W. Branicki]
14:20	Influence of stochastic gene activation on the reachability of protein level target in models with switchings Magdalena Ochab
14:40	SVAseq impact on RNA-seq data analysis Agata Muszyńska
15:00	CytoMeth – a tool to perform DNA methylation analysis of bisulfite converted Next Generation Sequencing data Michal J. Dabrowski
15:20	Coffee break
15:30	General Assembly of Polish Bioinformatics Society
18:30	Departure for social event
19:00	Dinner at Sukiennice Restaurant

Saturday, Sep 21th
	Session B3 Best PhD & MSc thesis awards 2018 (chair W. Nowak)
9:00	best MSc thesis competition: Dawid Dąbkowski Minimizing the deep coalescence cost Michał Karlicki Organellar genomes of eukaryotic microorganisms in metagenomic data Katarzyna Zofia Kędzierska Differential mutation analysis across gene sets in cancers Hanna Kranas Long-range contact detection method between chromatin fragments
10:00	PhD, 1st prize Computational and Statistical Methods for Mass Spectrometry Data Analysis Mateusz Łącki
10:20	Coffee break
	Session P3-1 [contributed presentations]
10:40	How is information decoded in developmental systems? Marcin Zagórski
11:00	Interplay between histone positioning and transcription in Archaea Dorota Matelska
11:20	Can Deep Learning be a tool for feature engineering? Yes, it can. Lung tumor CT imaging case study Franciszek Binczyk
11:40	Massive-scale structure and function predictions of human gut microbiome proteins for metagenomic applications Tomasz Kościółek
12:00	Closing remarks
12:20	Lunch

Polish Bioinformatics Society

PTBi Symposium: Krakow 2019 — Program

Conference menu