Bioinformatics in Toruń 2017 — Programme
| ____________ |
BIT17 Programme |
|
| Venue | Institute of Physics UMK, Grudziadzka 5 street, Toruń; COK Lecture Hall | |
Thursday, June 22th |
||
| 12:00 - 12:25 | Registration | |
| 12:30 - 13:25 | Lunch (included in registration fee) | |
| 13:25 - 13:30 | Conference opening / Welcome | |
| 13:30 - 14:45 |
Session I |
|
| 13:30 - 14:15 | Opening lecture: Harel Weinstein, Cornell University, New York, USA | "Formal representations and quantification of allostery in functional mechanisms of molecular machines" |
| 14:15 - 14:45 | Krzysztof Kuczera, University of Kansas, Lawrence, Kansas, USA | Modeling of peptide permeation across biological membranes |
| 14:45 - 15:00 | Coffee break | |
| 15:00 - 16:30 |
Session II |
|
| 15:15 - 16:00 | Wladek Minor, University of Virginia, Charlottesville, USA | "Data mining in biomedical sciences - big data perspective" |
| 16:00 - 16:30 | Keynote speaker: Andrew Smith, ELIXIR Hub, Hinxton, Cambridge, UK | ELIXIR Europe: progress so far and opportunities for engaging |
| 16:35 - 16:40 | Conference PHOTO at entrance to the Institute of Physics | |
| 16:40 - 17:30 | Poster session & Coffee break | |
| 17:30 - 18:30 |
Session III |
|
| 17:30 - 18:00 | Dan Staines, EMBL-EBI, Wellcome Trust Genome Campus Cambridge, UK | "Ensembl data - going beyond the browser" |
| 18:00 - 18:30 | Bartosz Wilczynski, University of Warsaw, Warsaw, Poland | "Machine learning from genomic data: finding the needle in multiple haystacks" |
| 18:45 - 19:45 | PTBI Board of Directors meeting (for the Board only) | |
| 20:00 - 22:00 | Conference Pierogi Banquet/Get together in "Pierogarnia Stary Toruń" restaurant, Most Paulinski 2 street (food included) | |
Friday, June 23th |
||
| 9:15 - 10:30 |
Session IV |
|
| 9:15 - 10:00 | Keynote speaker: Weida Tong, The National Center for Toxicological Research and U.S. Food and Drug Administration, Jefferson, Arkansas, USA | "Make genomics reproducible again – understanding statistics underpinning reproducible genomics" |
| 10:00 - 10:30 | Sebastian Deorowicz, Silesian University of Technology, Gliwice, Poland | "Flood of genomic (big) data" |
| 10:30 - 11:00 | Coffee break | |
| 11:00 - 12:30 |
Session V |
|
| 11:15 - 11:30 | Jarek Meller, Cincinnati Children`s Hospital Medical Center and University of Cincinnati, Cincinnati, USA | "Harnessing advances in proteomics and data science to characterize biological states in cellular systems" |
| 11:30 - 12:00 | Feroz Zahid, Simula Research Laboratory, Lysaker, Norway | "Efficient and cost-effective data-intensive computing on multi-clouds: introduction to the MELODIC project" |
| 12:00 - 12:30 | Zeynep Kurkcuoglu, Utrecht University, Utrecht, Netherlands | Integrative modelling of biomolecular complexes using HADDOCK |
| 12:30 - 14:30 | Lunch (included in registration fee) | Free sightseeing tour in English (1h 13:00-14:30) |
| 15:00 - 16:00 |
Session VI |
|
| 15:00 - 15:30 | Jacek Błażewicz, Poznan University of Technology, Poznan, Poland | DNA sequencing - from SBH to Polish genome project |
| 15:30 - 15:50 | Michael R. Crusoe, University of California, Davis, USA | Common workflow language |
| 15:50 - 16:10 | Karina Kubiak-Ossowska, University of Strathclyde, Glasgow, UK | "How to run not so big computer/data center: Management of tier-2 HPC: ARCHIE-WeST" |
| 16:10 - 17:00 |
Poster session & Coffee break |
|
| 17:00 - 18:45 |
Session VII |
|
| 17:00 - 17:20 | Maciej Antczak, Poznan University of Technology, Poznan, Poland | New approaches for determination of RNA pseudoknot order |
| 17:20 - 17:40 | Marcin Radom, Poznan University of Technology, Poznan, Poland | Stochastic Petri model of a cholesterol metabolism and its analysis |
| 17:40 - 17:55 | Rafał Jakubowski, CENT, University of Warsaw, Warsaw, Poland | TBA |
| 17.55 - 18:15 | Francisco Carrascoza, Poznan University of Technology, Poznan, Poland | "On the origins of life: theoretical studies of reactions catalyzed by montmorillonite on atmospheric-like gases" |
| 18.15 - 18:45 | Jiri Vondrasek, Czech Academy of Sciences, Prague / ELIXIR - Czechia, Czech Republic | TBA |
| 20:00 - 00:00 | Conference social gathering at "Hotel Nicolaus Restaurant" , Ducha Świętego 14-16 street | |
Saturday, June 24th |
||
| 8:30 - 14:00 | Coffee break | |
| 8:30 - 10:30 | Workshop I, COK Computer room | |
| Zeynep Kurkcuoglu, Utrecht University, Utrecht, Netherlands | Protein-protein docking using HADDOCK | |
| 10:30 - 14:00 | Workshop II, COK Computer room | |
| Michael R. Crusoe, University of California, Davis, USA | Common workflow language | |
| 11:00 - 14:00 | Workshop III, Computer room no II. | |
| Jarek Meller, Cincinnati Children`s Hospital Medical Center and University of Cincinnati, Cincinnati, USA | Systems biology of cellular perturbations |
Conference menu
Keynote speakers
- Harel Weinstein, Cornell University, New York, USA
- Weida Tong, The National Center for Toxicological Research and U.S. Food and Drug Administration, Jefferson, Arkansas, USA
- Andrew Smith, ELIXIR Hub, Hinxton, Cambridge, UK
Invited speakers
• Krzysztof Kuczera, University of Kansas, Lawrence, Kansas, USA
• Wladek Minor, University of Virginia, Charlottesville, USA
• Dan Staines, EMBL-EBI, Wellcome Trust Genome Campus Cambridge, UK
• Bartosz Wilczynski, University of Warsaw, Warsaw, Poland
• Sebastian Deorowicz, Silesian University of Technology, Gliwice, Poland
• Jarek Meller, Cincinnati Children`s Hospital Medical Center and University of Cincinnati, Cincinnati, USA
• Feroz Zahid, Simula Research Laboratory, Lysaker, Norway
• Zeynep Kurkcuoglu, Utrecht University, Utrecht, Netherlands
• Jacek Błażewicz, Poznan University of Technology, Poznan, Poland
• Karina Kubiak-Ossowska, University of Strathclyde, Glasgow, UK